PDB Entry (4yzu)

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Visualizer: MichelaNGLo

PDB ID: 4yzu Resolution: 1.41 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25937013 DOI: 10.1016/j.bmcl.2015.04.025
Protein
Protein Name: Coagulation factor IX
Protein Class: HYDROLASE
Uniprot ID/ACC: P00740 (FA9_HUMAN) Organism: Homo sapiens
Gene Symbol: F9 Gene ID: 2158
Pocket Descriptors
Volume: 948.288 Depth: 25.3014
Hydrophobicity: 0.639676 Drug Score: 0.402718
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[2-(5,6-dimethyl-1H-benzimidazol-2-yl)ethyl]-4-(4H-1,2,4-triazol-4-yl)benzamide
HET ID:   4K6 PubChem:   46978227
DrugBank:   - ChEMBL:   CHEMBL3423033
Canonical SMILES:   O=C(c1ccc(cc1)n1cnnc1)NCCc1[nH]c2c(n1)cc(c(c2)C)C
Standard InChI:   InChI=1S/C20H20N6O/c1-13-9-17-18(10-14(13)2)25-19(24-17)7-8-21-20(27)15-3-5-16(6-4-15)26-11-22-23-12-26/h3-6,9-12H,7-8H2,1-2H3,(H,21,27)(H,24,25)
Molecular Formula:   C20H20N6O Mol. Weight:   360.4124 Heavy Atoms:   27
Charge:   0 Is Chiral:   False logP:   3.1238
HBD:   2 HBA:   6 TPSA:   88.49
#Bonds:   31 #Rotatable Bonds:   6 Shape Complexity:   0.2
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Ki : 9000 nM
Binding MOAD Ki : 9000 nM