PDB Entry (4yzu) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4yzu | Resolution: 1.41 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25937013 | DOI: 10.1016/j.bmcl.2015.04.025 | |
Protein |
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Protein Name: Coagulation factor IX | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00740 (FA9_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F9 | Gene ID: 2158 |
Pocket Descriptors | |
Volume: 948.288 | Depth: 25.3014 |
Hydrophobicity: 0.639676 | Drug Score: 0.402718 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[2-(5,6-dimethyl-1H-benzimidazol-2-yl)ethyl]-4-(4H-1,2,4-triazol-4-yl)benzamide | ||
HET ID: 4K6 | PubChem: 46978227 | |
DrugBank: - | ChEMBL: CHEMBL3423033 | |
Canonical SMILES: O=C(c1ccc(cc1)n1cnnc1)NCCc1[nH]c2c(n1)cc(c(c2)C)C | ||
Standard InChI: InChI=1S/C20H20N6O/c1-13-9-17-18(10-14(13)2)25-19(24-17)7-8-21-20(27)15-3-5-16(6-4-15)26-11-22-23-12-26/h3-6,9-12H,7-8H2,1-2H3,(H,21,27)(H,24,25) | ||
Molecular Formula: C20H20N6O | Mol. Weight: 360.4124 | Heavy Atoms: 27 |
Charge: 0 | Is Chiral: False | logP: 3.1238 |
HBD: 2 | HBA: 6 | TPSA: 88.49 |
#Bonds: 31 | #Rotatable Bonds: 6 | Shape Complexity: 0.2 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Ki : 9000 nM |
Binding MOAD | Ki : 9000 nM |