PDB Entry (4brk)

Download

Visualizer: MichelaNGLo

PDB ID: 4brk Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23830739 DOI: 10.1016/j.str.2013.05.016
Protein
Protein Name: Ectonucleoside triphosphate diphosphohydrolase I
Protein Class: HYDROLASE
Uniprot ID/ACC: Q5ZUA2 (Q5ZUA2_LEGPH) Organism: Legionella pneumophila
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 637.12 Depth: 17.4401
Hydrophobicity: 0.647668 Drug Score: 0.220576
Pocket Similarity: Calculate
Ligand
Ligand Name:   5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine
HET ID:   UNP PubChem:   71604315
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@@H](CO[P@@](=O)(O[P@@](=O)(NP(=O)(O)O)O)O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O
Standard InChI:   InChI=1S/C9H16N3O14P3/c13-5-1-2-12(9(16)10-5)8-7(15)6(14)4(25-8)3-24-29(22,23)26-28(20,21)11-27(17,18)19/h1-2,4,6-8,14-15H,3H2,(H,22,23)(H,10,13,16)(H4,11,17,18,19,20,21)/t4-,6-,7-,8-/m1/s1
Molecular Formula:   C9H16N3O14P3 Mol. Weight:   483.1563 Heavy Atoms:   29
Charge:   0 Is Chiral:   True logP:   -2.537
HBD:   8 HBA:   16 TPSA:   296.6
#Bonds:   35 #Rotatable Bonds:   8 Shape Complexity:   0.5555556
Stereocomplexity:   0.6666667 Ligand Type:   Small Molecule
Binding Affinity
-