PDB Entry (1pu7)

Download

Visualizer: MichelaNGLo

PDB ID: 1pu7 Resolution: 1.93 Å Exp. Method: X-RAY DIFFRACTION
PMID: 14517230 DOI: 10.1093/emboj/cdg505
Protein
Protein Name: Endonuclease III
Protein Class: HYDROLASE
Uniprot ID/ACC: O25323 (O25323_HELPY) Organism: Helicobacter pylori
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 490.56 Depth: 23.1138
Hydrophobicity: 0.725191 Drug Score: 0.266856
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-AMINO-3,9-DIMETHYL-9H-PURIN-3-IUM
HET ID:   39A PubChem:   447936
DrugBank:   DB03730 ChEMBL:   CHEMBL1230068
Canonical SMILES:   Cn1cnc2c1[n+](C)cnc2N
Standard InChI:   InChI=1S/C7H9N5/c1-11-3-9-5-6(8)10-4-12(2)7(5)11/h3-4,8H,1-2H3/p+1
Molecular Formula:   C7H10N5+ Mol. Weight:   164.1878 Heavy Atoms:   12
Charge:   1 Is Chiral:   False logP:   -0.0438
HBD:   1 HBA:   4 TPSA:   60.61
#Bonds:   13 #Rotatable Bonds:   0 Shape Complexity:   0.2857143
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 800000 nM
Binding MOAD Ki : 800000 nM