PDB Entry (1pu7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1pu7 | Resolution: 1.93 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14517230 | DOI: 10.1093/emboj/cdg505 | |
Protein |
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Protein Name: Endonuclease III | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: O25323 (O25323_HELPY) | Organism: Helicobacter pylori |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 490.56 | Depth: 23.1138 |
Hydrophobicity: 0.725191 | Drug Score: 0.266856 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-AMINO-3,9-DIMETHYL-9H-PURIN-3-IUM | ||
HET ID: 39A | PubChem: 447936 | |
DrugBank: DB03730 | ChEMBL: CHEMBL1230068 | |
Canonical SMILES: Cn1cnc2c1[n+](C)cnc2N | ||
Standard InChI: InChI=1S/C7H9N5/c1-11-3-9-5-6(8)10-4-12(2)7(5)11/h3-4,8H,1-2H3/p+1 | ||
Molecular Formula: C7H10N5+ | Mol. Weight: 164.1878 | Heavy Atoms: 12 |
Charge: 1 | Is Chiral: False | logP: -0.0438 |
HBD: 1 | HBA: 4 | TPSA: 60.61 |
#Bonds: 13 | #Rotatable Bonds: 0 | Shape Complexity: 0.2857143 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 800000 nM |
Binding MOAD | Ki : 800000 nM |