PDB Entry (3meg)

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Visualizer: MichelaNGLo

PDB ID: 3meg Resolution: 2.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20438081 DOI: 10.1021/jm1002233
Protein
Protein Name: Reverse transcriptase
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P04585 (POL_HV1H2) Organism: Human immunodeficiency virus type 1 group M subtype B
Gene Symbol: - Gene ID: 155348
Pocket Descriptors
Volume: 197.696 Depth: 13.4834
Hydrophobicity: 0.747967 Drug Score: 0.0615961
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
HET ID:   T27 PubChem:   6451164
DrugBank:   DB05083 ChEMBL:   CHEMBL175691
Canonical SMILES:   N#C/C=C/c1cc(C)c(c(c1)C)Nc1ccnc(n1)Nc1ccc(cc1)C#N
Standard InChI:   InChI=1S/C22H18N6/c1-15-12-18(4-3-10-23)13-16(2)21(15)27-20-9-11-25-22(28-20)26-19-7-5-17(14-24)6-8-19/h3-9,11-13H,1-2H3,(H2,25,26,27,28)/b4-3+
Molecular Formula:   C22H18N6 Mol. Weight:   366.41852 Heavy Atoms:   28
Charge:   0 Is Chiral:   False logP:   5.13506
HBD:   2 HBA:   4 TPSA:   97.42
#Bonds:   30 #Rotatable Bonds:   5 Shape Complexity:   0.1
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 68 nM