PDB Entry (6hh4)

Download

Visualizer: MichelaNGLo

PDB ID: 6hh4 Resolution: 1.66 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30472116 DOI: 10.1016/j.chembiol.2018.11.001
Protein
Protein Name: ADP-ribose glycohydrolase ARH3
Protein Class: HYDROLASE
Uniprot ID/ACC: H3BCW1 (ADPRS_LATCH) Organism: Latimeria chalumnae
Gene Symbol: - Gene ID: 102353686
Pocket Descriptors
Volume: 3712.0 Depth: 42.5733
Hydrophobicity: 0.661316 Drug Score: 1.0
Pocket Similarity: Calculate
Ligand
Ligand Name:   ADP-ribosyl-L-arginine
HET ID:   F2R PubChem:   46173712, 46906082
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N=C(N[C@H]1O[C@@H]([C@H]([C@H]1O)O)CO[P@](=O)(O[P@](=O)(OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N)O)O)NCCC[C@@H](C(=O)O)N
Standard InChI:   InChI=1S/C21H35N9O15P2/c22-8(20(35)36)2-1-3-25-21(24)29-18-14(33)12(31)9(43-18)4-41-46(37,38)45-47(39,40)42-5-10-13(32)15(34)19(44-10)30-7-28-11-16(23)26-6-27-17(11)30/h6-10,12-15,18-19,31-34H,1-5,22H2,(H,35,36)(H,37,38)(H,39,40)(H2,23,26,27)(H3,24,25,29)/t8-,9+,10+,12+,13+,14+,15+,18-,19+/m0/s1
Molecular Formula:   C21H35N9O15P2 Mol. Weight:   715.5014 Heavy Atoms:   47
Charge:   0 Is Chiral:   True logP:   -1.8059
HBD:   12 HBA:   24 TPSA:   402.14
#Bonds:   59 #Rotatable Bonds:   17 Shape Complexity:   0.6666667
Stereocomplexity:   0.52380955 Ligand Type:   Small Molecule
Binding Affinity
-