PDB Entry (1bky) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1bky | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 10377383 | DOI: 10.1073/pnas.96.13.7149 | |
Protein |
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Protein Name: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P07617 (MCE_VACCW) | Organism: Vaccinia virus |
Gene Symbol: - | Gene ID: 3707551 |
Pocket Descriptors | |
Volume: 253.44 | Depth: 13.8737 |
Hydrophobicity: 0.76087 | Drug Score: 0.31389 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-METHYLCYTOSINE | ||
HET ID: 1MC | PubChem: 79143 | |
DrugBank: DB04314 | ChEMBL: CHEMBL500883 | |
Canonical SMILES: Cn1ccc(nc1=O)N | ||
Standard InChI: InChI=1S/C5H7N3O/c1-8-3-2-4(6)7-5(8)9/h2-3H,1H3,(H2,6,7,9) | ||
Molecular Formula: C5H7N3O | Mol. Weight: 125.12858 | Heavy Atoms: 9 |
Charge: 0 | Is Chiral: False | logP: -0.0563 |
HBD: 1 | HBA: 4 | TPSA: 60.91 |
#Bonds: 9 | #Rotatable Bonds: 0 | Shape Complexity: 0.2 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 144000 nM |
Binding MOAD | Kd : 144000 nM |