PDB Entry (1bky)

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Visualizer: MichelaNGLo

PDB ID: 1bky Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10377383 DOI: 10.1073/pnas.96.13.7149
Protein
Protein Name: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P07617 (MCE_VACCW) Organism: Vaccinia virus
Gene Symbol: - Gene ID: 3707551
Pocket Descriptors
Volume: 253.44 Depth: 13.8737
Hydrophobicity: 0.76087 Drug Score: 0.31389
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-METHYLCYTOSINE
HET ID:   1MC PubChem:   79143
DrugBank:   DB04314 ChEMBL:   CHEMBL500883
Canonical SMILES:   Cn1ccc(nc1=O)N
Standard InChI:   InChI=1S/C5H7N3O/c1-8-3-2-4(6)7-5(8)9/h2-3H,1H3,(H2,6,7,9)
Molecular Formula:   C5H7N3O Mol. Weight:   125.12858 Heavy Atoms:   9
Charge:   0 Is Chiral:   False logP:   -0.0563
HBD:   1 HBA:   4 TPSA:   60.91
#Bonds:   9 #Rotatable Bonds:   0 Shape Complexity:   0.2
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 144000 nM
Binding MOAD Kd : 144000 nM