PDB Entry (5vsm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5vsm | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28607080 | DOI: 10.1073/pnas.1705402114 | |
Protein |
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Protein Name: Radical S-adenosyl methionine domain-containing protein 2 | |
Protein Class: CELL CYCLE | |
Uniprot ID/ACC: Q8CBB9 (RSAD2_MOUSE) | Organism: Mus musculus |
Gene Symbol: Rsad2 | Gene ID: 58185 |
Pocket Descriptors | |
Volume: 1398.4 | Depth: 29.5584 |
Hydrophobicity: 0.660194 | Drug Score: 0.779034 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5'-DEOXYADENOSINE | ||
HET ID: 5AD | PubChem: 439182 | |
DrugBank: - | ChEMBL: CHEMBL443485 | |
Canonical SMILES: C[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N | ||
Standard InChI: InChI=1S/C10H13N5O3/c1-4-6(16)7(17)10(18-4)15-3-14-5-8(11)12-2-13-9(5)15/h2-4,6-7,10,16-17H,1H3,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1 | ||
Molecular Formula: C10H13N5O3 | Mol. Weight: 251.24191 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: -0.3712 |
HBD: 3 | HBA: 8 | TPSA: 119.31 |
#Bonds: 24 | #Rotatable Bonds: 1 | Shape Complexity: 0.5 |
Stereocomplexity: 0.4 | Ligand Type: Small Molecule |
Binding Affinity |
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