PDB Entry (5vsm)

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Visualizer: MichelaNGLo

PDB ID: 5vsm Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28607080 DOI: 10.1073/pnas.1705402114
Protein
Protein Name: Radical S-adenosyl methionine domain-containing protein 2
Protein Class: CELL CYCLE
Uniprot ID/ACC: Q8CBB9 (RSAD2_MOUSE) Organism: Mus musculus
Gene Symbol: Rsad2 Gene ID: 58185
Pocket Descriptors
Volume: 1398.4 Depth: 29.5584
Hydrophobicity: 0.660194 Drug Score: 0.779034
Pocket Similarity: Calculate
Ligand
Ligand Name:   5'-DEOXYADENOSINE
HET ID:   5AD PubChem:   439182
DrugBank:   - ChEMBL:   CHEMBL443485
Canonical SMILES:   C[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N
Standard InChI:   InChI=1S/C10H13N5O3/c1-4-6(16)7(17)10(18-4)15-3-14-5-8(11)12-2-13-9(5)15/h2-4,6-7,10,16-17H,1H3,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1
Molecular Formula:   C10H13N5O3 Mol. Weight:   251.24191 Heavy Atoms:   18
Charge:   0 Is Chiral:   True logP:   -0.3712
HBD:   3 HBA:   8 TPSA:   119.31
#Bonds:   24 #Rotatable Bonds:   1 Shape Complexity:   0.5
Stereocomplexity:   0.4 Ligand Type:   Small Molecule
Binding Affinity
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