PDB Entry (1rao) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1rao | Resolution: 1.56 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15016362 | DOI: 10.1016/j.str.2004.02.003 | |
Protein |
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Protein Name: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P26281 (HPPK_ECOLI) | Organism: Escherichia coli |
Gene Symbol: - | Gene ID: 948792 |
Pocket Descriptors | |
Volume: 605.824 | Depth: 19.4319 |
Hydrophobicity: 0.696774 | Drug Score: 0.440232 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE | ||
HET ID: HH2 | PubChem: 135440058 | |
DrugBank: DB04047 | ChEMBL: CHEMBL1233314 | |
Canonical SMILES: Nc1nc2ncc(nc2c(=O)[nH]1)CO[P@@](=O)(OP(=O)(O)O)O | ||
Standard InChI: InChI=1S/C7H9N5O8P2/c8-7-11-5-4(6(13)12-7)10-3(1-9-5)2-19-22(17,18)20-21(14,15)16/h1H,2H2,(H,17,18)(H2,14,15,16)(H3,8,9,11,12,13) | ||
Molecular Formula: C7H9N5O8P2 | Mol. Weight: 353.1226 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: False | logP: -0.3972 |
HBD: 5 | HBA: 12 | TPSA: 230.46 |
#Bonds: 24 | #Rotatable Bonds: 5 | Shape Complexity: 0.14285715 |
Stereocomplexity: 0.14285715 | Ligand Type: Small Molecule |
Binding Affinity |
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