PDB Entry (6wyo) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6wyo | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32880591 | DOI: 10.1107/S2053230X20010250 | |
Protein |
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Protein Name: Histone deacetylase 6 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac6 | Gene ID: 565482 |
Pocket Descriptors | |
Volume: 1887.55 | Depth: 39.7779 |
Hydrophobicity: 0.684096 | Drug Score: 0.998935 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: TRICHOSTATIN A | ||
HET ID: TSN | PubChem: 444732 | |
DrugBank: DB04297 | ChEMBL: CHEMBL99 | |
Canonical SMILES: ONC(=O)/C=C/C(=C/[C@H](C(=O)c1ccc(cc1)N(C)C)C)/C | ||
Standard InChI: InChI=1S/C17H22N2O3/c1-12(5-10-16(20)18-22)11-13(2)17(21)14-6-8-15(9-7-14)19(3)4/h5-11,13,22H,1-4H3,(H,18,20)/b10-5+,12-11+/t13-/m1/s1 | ||
Molecular Formula: C17H22N2O3 | Mol. Weight: 302.3682 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: True | logP: 2.9702 |
HBD: 2 | HBA: 5 | TPSA: 69.64 |
#Bonds: 23 | #Rotatable Bonds: 7 | Shape Complexity: 0.29411766 |
Stereocomplexity: 0.05882353 | Ligand Type: Small Molecule |
Binding Affinity |
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