PDB Entry (6wyo)

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Visualizer: MichelaNGLo

PDB ID: 6wyo Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32880591 DOI: 10.1107/S2053230X20010250
Protein
Protein Name: Histone deacetylase 6
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) Organism: Danio rerio
Gene Symbol: hdac6 Gene ID: 565482
Pocket Descriptors
Volume: 1887.55 Depth: 39.7779
Hydrophobicity: 0.684096 Drug Score: 0.998935
Pocket Similarity: Calculate
Ligand
Ligand Name:   TRICHOSTATIN A
HET ID:   TSN PubChem:   444732
DrugBank:   DB04297 ChEMBL:   CHEMBL99
Canonical SMILES:   ONC(=O)/C=C/C(=C/[C@H](C(=O)c1ccc(cc1)N(C)C)C)/C
Standard InChI:   InChI=1S/C17H22N2O3/c1-12(5-10-16(20)18-22)11-13(2)17(21)14-6-8-15(9-7-14)19(3)4/h5-11,13,22H,1-4H3,(H,18,20)/b10-5+,12-11+/t13-/m1/s1
Molecular Formula:   C17H22N2O3 Mol. Weight:   302.3682 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   2.9702
HBD:   2 HBA:   5 TPSA:   69.64
#Bonds:   23 #Rotatable Bonds:   7 Shape Complexity:   0.29411766
Stereocomplexity:   0.05882353 Ligand Type:   Small Molecule
Binding Affinity
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