PDB Entry (3r9g)

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Visualizer: MichelaNGLo

PDB ID: 3r9g Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21507941 DOI: 10.1074/jbc.M111.226282
Protein
Protein Name: MccE protein
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q47510 (Q47510_ECOLX) Organism: Escherichia coli
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1328.0 Depth: 29.2985
Hydrophobicity: 0.730612 Drug Score: 0.868048
Pocket Similarity: Calculate
Ligand
Ligand Name:   5'-O-[(R)-[(N-acetyl-L-alpha-aspartyl)amino](3-aminopropoxy)phosphoryl]adenosine
HET ID:   7MC PubChem:   51049659
DrugBank:   - ChEMBL:   CHEMBL1738756
Canonical SMILES:   NCCCO[P@](=O)(NC(=O)[C@@H](NC(=O)C)CC(=O)O)OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N
Standard InChI:   InChI=1S/C19H29N8O10P/c1-9(28)25-10(5-12(29)30)18(33)26-38(34,35-4-2-3-20)36-6-11-14(31)15(32)19(37-11)27-8-24-13-16(21)22-7-23-17(13)27/h7-8,10-11,14-15,19,31-32H,2-6,20H2,1H3,(H,25,28)(H,29,30)(H2,21,22,23)(H,26,33,34)/t10-,11+,14+,15+,19+,38+/m0/s1
Molecular Formula:   C19H29N8O10P Mol. Weight:   560.4549 Heavy Atoms:   38
Charge:   0 Is Chiral:   True logP:   -0.3233
HBD:   7 HBA:   18 TPSA:   286.17
#Bonds:   45 #Rotatable Bonds:   15 Shape Complexity:   0.57894737
Stereocomplexity:   0.31578946 Ligand Type:   Small Molecule
Binding Affinity
-