PDB Entry (6ck0)

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Visualizer: MichelaNGLo

PDB ID: 6ck0 Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Biotin acetyl coenzyme A carboxylase synthetase
Protein Class: LIGASE
Uniprot ID/ACC: B5Z8D8 (B5Z8D8_HELPG) Organism: Helicobacter pylori
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 569.216 Depth: 22.2207
Hydrophobicity: 0.583942 Drug Score: 0.368314
Pocket Similarity: Calculate
Ligand
Ligand Name:   5'-O-[(S)-({5-[(2R,3aS,4S,6aR)-2-hydroxyhexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}oxy){[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]adenosine
HET ID:   F5D PubChem:   132473020
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1N[C@@H]2[C@H](N1)[C@@H](SC2)CCCCC(=O)O[P@@](=O)(O[P@](=O)(OP(=O)(O)O)O)OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N
Standard InChI:   InChI=1S/C20H32N7O15P3S/c21-17-14-18(23-7-22-17)27(8-24-14)19-16(30)15(29)10(39-19)5-38-45(37,42-44(35,36)41-43(32,33)34)40-12(28)4-2-1-3-11-13-9(6-46-11)25-20(31)26-13/h7-11,13,15-16,19-20,25-26,29-31H,1-6H2,(H,35,36)(H2,21,22,23)(H2,32,33,34)/t9-,10+,11-,13-,15+,16+,19+,20+,45-/m0/s1
Molecular Formula:   C20H32N7O15P3S Mol. Weight:   735.49225 Heavy Atoms:   46
Charge:   0 Is Chiral:   True logP:   0.0424
HBD:   9 HBA:   23 TPSA:   384.22
#Bonds:   58 #Rotatable Bonds:   15 Shape Complexity:   0.7
Stereocomplexity:   0.5 Ligand Type:   Small Molecule
Binding Affinity
-