PDB Entry (5ceh) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5ceh | Resolution: 3.14 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27214401 | DOI: 10.1038/nchembio.2085 | |
Protein |
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Protein Name: Lysine-specific demethylase 5A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5A | Gene ID: 5927 |
Pocket Descriptors | |
Volume: 289.792 | Depth: 15.6326 |
Hydrophobicity: 0.669811 | Drug Score: 0.204093 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 7-oxo-5-phenyl-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile | ||
HET ID: 50P | PubChem: 78426698 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: N#Cc1cnn2c1[nH]c(c1ccccc1)c(c2=O)C(C)C | ||
Standard InChI: InChI=1S/C16H14N4O/c1-10(2)13-14(11-6-4-3-5-7-11)19-15-12(8-17)9-18-20(15)16(13)21/h3-7,9-10,19H,1-2H3 | ||
Molecular Formula: C16H14N4O | Mol. Weight: 278.30856 | Heavy Atoms: 21 |
Charge: 0 | Is Chiral: False | logP: 2.68468 |
HBD: 1 | HBA: 4 | TPSA: 73.95 |
#Bonds: 24 | #Rotatable Bonds: 2 | Shape Complexity: 0.2 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 10(20)nM |