PDB Entry (4cik)

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Visualizer: MichelaNGLo

PDB ID: 4cik Resolution: 1.78 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24900876 DOI: 10.1021/ml400526d
Protein
Protein Name: Plasminogen
Protein Class: HYDROLASE
Uniprot ID/ACC: P00747 (PLMN_HUMAN) Organism: Homo sapiens
Gene Symbol: PLG Gene ID: 5340
Pocket Descriptors
Volume: 151.488 Depth: 9.74885
Hydrophobicity: 0.732143 Drug Score: 0.58611
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[(2R,4S)-2-(phenylmethyl)piperidin-4-yl]-1,2-oxazol-3-one
HET ID:   XO3 PubChem:   46938037
DrugBank:   - ChEMBL:   CHEMBL3287849
Canonical SMILES:   O=c1[nH]oc(c1)[C@H]1CCN[C@H](C1)Cc1ccccc1
Standard InChI:   InChI=1S/C15H18N2O2/c18-15-10-14(19-17-15)12-6-7-16-13(9-12)8-11-4-2-1-3-5-11/h1-5,10,12-13,16H,6-9H2,(H,17,18)/t12-,13-/m0/s1
Molecular Formula:   C15H18N2O2 Mol. Weight:   258.3156 Heavy Atoms:   19
Charge:   0 Is Chiral:   True logP:   2.375
HBD:   2 HBA:   3 TPSA:   58.03
#Bonds:   24 #Rotatable Bonds:   3 Shape Complexity:   0.4
Stereocomplexity:   0.13333334 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 950 nM, IC50 : 280 nM, IC50 : 950 nM, IC50 : 280 nM