PDB Entry (4cik) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4cik | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24900876 | DOI: 10.1021/ml400526d | |
Protein |
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Protein Name: Plasminogen | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00747 (PLMN_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PLG | Gene ID: 5340 |
Pocket Descriptors | |
Volume: 151.488 | Depth: 9.74885 |
Hydrophobicity: 0.732143 | Drug Score: 0.58611 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-[(2R,4S)-2-(phenylmethyl)piperidin-4-yl]-1,2-oxazol-3-one | ||
HET ID: XO3 | PubChem: 46938037 | |
DrugBank: - | ChEMBL: CHEMBL3287849 | |
Canonical SMILES: O=c1[nH]oc(c1)[C@H]1CCN[C@H](C1)Cc1ccccc1 | ||
Standard InChI: InChI=1S/C15H18N2O2/c18-15-10-14(19-17-15)12-6-7-16-13(9-12)8-11-4-2-1-3-5-11/h1-5,10,12-13,16H,6-9H2,(H,17,18)/t12-,13-/m0/s1 | ||
Molecular Formula: C15H18N2O2 | Mol. Weight: 258.3156 | Heavy Atoms: 19 |
Charge: 0 | Is Chiral: True | logP: 2.375 |
HBD: 2 | HBA: 3 | TPSA: 58.03 |
#Bonds: 24 | #Rotatable Bonds: 3 | Shape Complexity: 0.4 |
Stereocomplexity: 0.13333334 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 950 nM, IC50 : 280 nM, IC50 : 950 nM, IC50 : 280 nM |