PDB Entry (1oyn) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1oyn | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12842049 | DOI: 10.1016/S0969-2126(03)00123-0 | |
Protein |
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Protein Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4D | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q08499 (PDE4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PDE4D | Gene ID: 5144 |
Pocket Descriptors | |
Volume: 298.112 | Depth: 16.9367 |
Hydrophobicity: 0.696774 | Drug Score: 0.0899347 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ROLIPRAM | ||
HET ID: ROL | PubChem: 448055 | |
DrugBank: DB01954 | ChEMBL: CHEMBL430893 | |
Canonical SMILES: COc1ccc(cc1OC1CCCC1)[C@@H]1CNC(=O)C1 | ||
Standard InChI: InChI=1S/C16H21NO3/c1-19-14-7-6-11(12-9-16(18)17-10-12)8-15(14)20-13-4-2-3-5-13/h6-8,12-13H,2-5,9-10H2,1H3,(H,17,18)/t12-/m0/s1 | ||
Molecular Formula: C16H21NO3 | Mol. Weight: 275.34283 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: 2.9489 |
HBD: 1 | HBA: 4 | TPSA: 47.56 |
#Bonds: 23 | #Rotatable Bonds: 4 | Shape Complexity: 0.5625 |
Stereocomplexity: 0.0625 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 550 nM |
Binding MOAD | IC50 : 550 nM |