PDB Entry (1oyn)

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PDB ID: 1oyn Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12842049 DOI: 10.1016/S0969-2126(03)00123-0
Protein
Protein Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Protein Class: HYDROLASE
Uniprot ID/ACC: Q08499 (PDE4D_HUMAN) Organism: Homo sapiens
Gene Symbol: PDE4D Gene ID: 5144
Pocket Descriptors
Volume: 298.112 Depth: 16.9367
Hydrophobicity: 0.696774 Drug Score: 0.0899347
Pocket Similarity: Calculate
Ligand
Ligand Name:   ROLIPRAM
HET ID:   ROL PubChem:   448055
DrugBank:   DB01954 ChEMBL:   CHEMBL430893
Canonical SMILES:   COc1ccc(cc1OC1CCCC1)[C@@H]1CNC(=O)C1
Standard InChI:   InChI=1S/C16H21NO3/c1-19-14-7-6-11(12-9-16(18)17-10-12)8-15(14)20-13-4-2-3-5-13/h6-8,12-13H,2-5,9-10H2,1H3,(H,17,18)/t12-/m0/s1
Molecular Formula:   C16H21NO3 Mol. Weight:   275.34283 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   2.9489
HBD:   1 HBA:   4 TPSA:   47.56
#Bonds:   23 #Rotatable Bonds:   4 Shape Complexity:   0.5625
Stereocomplexity:   0.0625 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind IC50 : 550 nM
Binding MOAD IC50 : 550 nM