PDB Entry (6f30)

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Visualizer: MichelaNGLo

PDB ID: 6f30 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30022031 DOI: 10.1038/s41598-018-28814-y
Protein
Protein Name: Ectonucleotide pyrophosphatase/phosphodiesterase family member 3
Protein Class: HYDROLASE
Uniprot ID/ACC: P97675 (ENPP3_RAT) Organism: Rattus norvegicus
Gene Symbol: Enpp3 Gene ID: 54410
Pocket Descriptors
Volume: 90.304 Depth: 17.0321
Hydrophobicity: 0.752688 Drug Score: 0.0132901
Pocket Similarity: Calculate
Ligand
Ligand Name:   URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
HET ID:   UD1 PubChem:   445675
DrugBank:   DB03397 ChEMBL:   CHEMBL388154
Canonical SMILES:   OC[C@H]1O[C@H](O[P@](=O)(O[P@](=O)(OC[C@H]2O[C@H]([C@@H]([C@@H]2O)O)n2ccc(=O)[nH]c2=O)O)O)[C@@H]([C@H]([C@@H]1O)O)NC(=O)C
Standard InChI:   InChI=1S/C17H27N3O17P2/c1-6(22)18-10-13(26)11(24)7(4-21)35-16(10)36-39(31,32)37-38(29,30)33-5-8-12(25)14(27)15(34-8)20-3-2-9(23)19-17(20)28/h2-3,7-8,10-16,21,24-27H,4-5H2,1H3,(H,18,22)(H,29,30)(H,31,32)(H,19,23,28)/t7-,8-,10-,11-,12-,13-,14-,15-,16-/m1/s1
Molecular Formula:   C17H27N3O17P2 Mol. Weight:   607.3537 Heavy Atoms:   39
Charge:   0 Is Chiral:   True logP:   -4.259
HBD:   9 HBA:   19 TPSA:   325.48
#Bonds:   51 #Rotatable Bonds:   11 Shape Complexity:   0.7058824
Stereocomplexity:   0.64705884 Ligand Type:   Small Molecule
Binding Affinity
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