PDB Entry (4z5x) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4z5x | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25980608 | DOI: 10.1016/j.febslet.2015.05.013 | |
Protein |
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Protein Name: Glycogen phosphorylase, muscle form | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P00489 (PYGM_RABIT) | Organism: Oryctolagus cuniculus |
Gene Symbol: - | Gene ID: 100008972 |
Pocket Descriptors | |
Volume: 151.68 | Depth: 15.1177 |
Hydrophobicity: 0.75 | Drug Score: 0.0952617 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3,4,5-trihydroxybenzoic acid | ||
HET ID: GDE | PubChem: 370 | |
DrugBank: - | ChEMBL: CHEMBL288114 | |
Canonical SMILES: OC(=O)c1cc(O)c(c(c1)O)O | ||
Standard InChI: InChI=1S/C7H6O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1-2,8-10H,(H,11,12) | ||
Molecular Formula: C7H6O5 | Mol. Weight: 170.11954 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: False | logP: 0.5016 |
HBD: 4 | HBA: 5 | TPSA: 97.99 |
#Bonds: 12 | #Rotatable Bonds: 1 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Ki : 1730000 nM |