PDB Entry (3ocz) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 3ocz | Resolution: 1.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21933344 | DOI: 10.1111/j.1742-4658.2011.08360.x | |
Protein |
|
Protein Name: Lipoprotein E | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P26093 (HEL_HAEIN) | Organism: Haemophilus influenzae |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 1931.84 | Depth: 33.7188 |
Hydrophobicity: 0.678378 | Drug Score: 0.997194 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: ADENOSINE -5'-THIO-MONOPHOSPHATE | ||
HET ID: SRA | PubChem: 161275, 6913230 | |
DrugBank: - | ChEMBL: CHEMBL574816 | |
Canonical SMILES: O[C@@H]1[C@H](O)[C@H](O[C@H]1n1cnc2c1ncnc2N)COP(=S)(O)O | ||
Standard InChI: InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(21-10)1-20-22(18,19)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/t4-,6-,7-,10-/m1/s1 | ||
Molecular Formula: C10H14N5O6PS | Mol. Weight: 363.28683 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: True | logP: -0.5148 |
HBD: 5 | HBA: 12 | TPSA: 210.9 |
#Bonds: 29 | #Rotatable Bonds: 4 | Shape Complexity: 0.5 |
Stereocomplexity: 0.4 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 35 nM |
Binding MOAD | Ki : 350 nM |