PDB Entry (3ocz)

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Visualizer: MichelaNGLo

PDB ID: 3ocz Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21933344 DOI: 10.1111/j.1742-4658.2011.08360.x
Protein
Protein Name: Lipoprotein E
Protein Class: HYDROLASE
Uniprot ID/ACC: P26093 (HEL_HAEIN) Organism: Haemophilus influenzae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1931.84 Depth: 33.7188
Hydrophobicity: 0.678378 Drug Score: 0.997194
Pocket Similarity: Calculate
Ligand
Ligand Name:   ADENOSINE -5'-THIO-MONOPHOSPHATE
HET ID:   SRA PubChem:   161275, 6913230
DrugBank:   - ChEMBL:   CHEMBL574816
Canonical SMILES:   O[C@@H]1[C@H](O)[C@H](O[C@H]1n1cnc2c1ncnc2N)COP(=S)(O)O
Standard InChI:   InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(21-10)1-20-22(18,19)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/t4-,6-,7-,10-/m1/s1
Molecular Formula:   C10H14N5O6PS Mol. Weight:   363.28683 Heavy Atoms:   23
Charge:   0 Is Chiral:   True logP:   -0.5148
HBD:   5 HBA:   12 TPSA:   210.9
#Bonds:   29 #Rotatable Bonds:   4 Shape Complexity:   0.5
Stereocomplexity:   0.4 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 35 nM
Binding MOAD Ki : 350 nM