PDB Entry (4h1y)

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Visualizer: MichelaNGLo

PDB ID: 4h1y Resolution: 1.58 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23142347 DOI: 10.1016/j.str.2012.10.001
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 219.904 Depth: 16.1937
Hydrophobicity: 0.696203 Drug Score: 0.128847
Pocket Similarity: Calculate
Ligand
Ligand Name:   2,2'-[(2-{[2-({[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)ethyl]amino}-2-oxoethyl)imino]diacetic acid (non-preferred name)
HET ID:   0YQ PubChem:   70678493
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(CN(CC(=O)O)CC(=O)O)NCCNC(=O)[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1ccc(=O)[nH]c1=O
Standard InChI:   InChI=1S/C17H23N5O11/c23-8-1-4-22(17(32)20-8)16-13(30)12(29)14(33-16)15(31)19-3-2-18-9(24)5-21(6-10(25)26)7-11(27)28/h1,4,12-14,16,29-30H,2-3,5-7H2,(H,18,24)(H,19,31)(H,25,26)(H,27,28)(H,20,23,32)/t12-,13+,14-,16+/m0/s1
Molecular Formula:   C17H23N5O11 Mol. Weight:   473.39142 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   -4.3588
HBD:   7 HBA:   15 TPSA:   240.59
#Bonds:   39 #Rotatable Bonds:   13 Shape Complexity:   0.5294118
Stereocomplexity:   0.23529412 Ligand Type:   Small Molecule
Binding Affinity
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