PDB Entry (5gga)

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Visualizer: MichelaNGLo

PDB ID: 5gga Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28375146 DOI: 10.1107/S2059798317002534
Protein
Protein Name: 8-oxo-(d)GTP phosphatase
Protein Class: TRANSFERASE
Uniprot ID/ACC: A0QUZ2 (MUTT1_MYCS2) Organism: Mycolicibacterium smegmatis
Gene Symbol: - Gene ID: 45743943
Pocket Descriptors
Volume: 559.616 Depth: 18.9694
Hydrophobicity: 0.723214 Drug Score: 0.555164
Pocket Similarity: Calculate
Ligand
Ligand Name:   [(2R,3S,4R,5R)-5-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate
HET ID:   G8D PubChem:   135567132, 70678664
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@@H](CO[P@](=O)(OP(=O)(O)O)O)O[C@H]([C@@H]1O)n1c(=O)[nH]c2c1nc(N)[nH]c2=O
Standard InChI:   InChI=1S/C10H15N5O12P2/c11-9-13-6-3(7(18)14-9)12-10(19)15(6)8-5(17)4(16)2(26-8)1-25-29(23,24)27-28(20,21)22/h2,4-5,8,16-17H,1H2,(H,12,19)(H,23,24)(H2,20,21,22)(H3,11,13,14,18)/t2-,4-,5-,8-/m1/s1
Molecular Formula:   C10H15N5O12P2 Mol. Weight:   459.19992 Heavy Atoms:   29
Charge:   0 Is Chiral:   True logP:   -2.5782
HBD:   8 HBA:   15 TPSA:   292.16
#Bonds:   37 #Rotatable Bonds:   6 Shape Complexity:   0.5
Stereocomplexity:   0.5 Ligand Type:   Small Molecule
Binding Affinity
-