PDB Entry (3m94)

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Visualizer: MichelaNGLo

PDB ID: 3m94 Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21965542 DOI: 10.1093/nar/gkr650
Protein
Protein Name: Eukaryotic translation initiation factor 4E-binding protein 1
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: Q13541 (4EBP1_HUMAN) Organism: Homo sapiens
Gene Symbol: EIF4EBP1 Gene ID: 1978
Pocket Descriptors
Volume: 408.192 Depth: 15.5846
Hydrophobicity: 0.678571 Drug Score: 0.207475
Pocket Similarity: Calculate
Ligand
Ligand Name:   N,N,7-trimethylguanosine 5'-(trihydrogen diphosphate)
HET ID:   M7M PubChem:   137349735
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@@H](CO[P@@](=O)(OP(=O)(O)O)O)O[C@H]([C@@H]1O)N1CN(c2c1[nH]c(nc2=O)N(C)C)C
Standard InChI:   InChI=1S/C13H23N5O11P2/c1-16(2)13-14-10-7(11(21)15-13)17(3)5-18(10)12-9(20)8(19)6(28-12)4-27-31(25,26)29-30(22,23)24/h6,8-9,12,19-20H,4-5H2,1-3H3,(H,25,26)(H,14,15,21)(H2,22,23,24)/t6-,8-,9-,12-/m1/s1
Molecular Formula:   C13H23N5O11P2 Mol. Weight:   487.29614 Heavy Atoms:   31
Charge:   0 Is Chiral:   True logP:   -2.1474
HBD:   6 HBA:   15 TPSA:   238.07
#Bonds:   38 #Rotatable Bonds:   7 Shape Complexity:   0.6923077
Stereocomplexity:   0.3846154 Ligand Type:   Small Molecule
Binding Affinity
-