PDB Entry (2p2v)

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Visualizer: MichelaNGLo

PDB ID: 2p2v Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17518445 DOI: 10.1021/bi602543d
Protein
Protein Name: Alpha-2,3-sialyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q9RGF1 (Q9RGF1_CAMJU) Organism: Campylobacter jejuni
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1112.64 Depth: 28.5489
Hydrophobicity: 0.730769 Drug Score: 0.783003
Pocket Similarity: Calculate
Ligand
Ligand Name:   CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID
HET ID:   CSF PubChem:   4369303
DrugBank:   - ChEMBL:   CHEMBL1231948
Canonical SMILES:   OC[C@H]([C@H]([C@@H]1O[C@](O[P@@](=O)(OC[C@H]2O[C@H]([C@@H]([C@@H]2O)O)n2ccc(nc2=O)N)O)(C(=O)O)[C@@H]([C@@H]([C@H]1NC(=O)C)O)F)O)O
Standard InChI:   InChI=1S/C20H30FN4O16P/c1-6(27)23-10-13(31)16(21)20(18(33)34,40-15(10)11(29)7(28)4-26)41-42(36,37)38-5-8-12(30)14(32)17(39-8)25-3-2-9(22)24-19(25)35/h2-3,7-8,10-17,26,28-32H,4-5H2,1H3,(H,23,27)(H,33,34)(H,36,37)(H2,22,24,35)/t7-,8-,10-,11-,12-,13-,14-,15-,16-,17-,20-/m1/s1
Molecular Formula:   C20H30FN4O16P Mol. Weight:   632.4416 Heavy Atoms:   42
Charge:   0 Is Chiral:   True logP:   -4.3521
HBD:   10 HBA:   20 TPSA:   332.72
#Bonds:   54 #Rotatable Bonds:   12 Shape Complexity:   0.7
Stereocomplexity:   0.6 Ligand Type:   Small Molecule
Binding Affinity
-