PDB Entry (1zkn)

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Visualizer: MichelaNGLo

PDB ID: 1zkn Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 14668322 DOI: 10.1074/jbc.M311556200
Protein
Protein Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Protein Class: HYDROLASE
Uniprot ID/ACC: Q08499 (PDE4D_HUMAN) Organism: Homo sapiens
Gene Symbol: PDE4D Gene ID: 5144
Pocket Descriptors
Volume: 268.8 Depth: 15.9031
Hydrophobicity: 0.698529 Drug Score: 0.098825
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-ISOBUTYL-1-METHYLXANTHINE
HET ID:   IBM PubChem:   3758
DrugBank:   DB07954 ChEMBL:   CHEMBL275084
Canonical SMILES:   CC(Cn1c(=O)n(C)c(=O)c2c1[nH]cn2)C
Standard InChI:   InChI=1S/C10H14N4O2/c1-6(2)4-14-8-7(11-5-12-8)9(15)13(3)10(14)16/h5-6H,4H2,1-3H3,(H,11,12)
Molecular Formula:   C10H14N4O2 Mol. Weight:   222.24376 Heavy Atoms:   16
Charge:   0 Is Chiral:   False logP:   0.0793
HBD:   1 HBA:   5 TPSA:   72.68
#Bonds:   18 #Rotatable Bonds:   2 Shape Complexity:   0.5
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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