PDB Entry (1zkn) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1zkn | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14668322 | DOI: 10.1074/jbc.M311556200 | |
Protein |
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Protein Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4D | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q08499 (PDE4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PDE4D | Gene ID: 5144 |
Pocket Descriptors | |
Volume: 268.8 | Depth: 15.9031 |
Hydrophobicity: 0.698529 | Drug Score: 0.098825 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-ISOBUTYL-1-METHYLXANTHINE | ||
HET ID: IBM | PubChem: 3758 | |
DrugBank: DB07954 | ChEMBL: CHEMBL275084 | |
Canonical SMILES: CC(Cn1c(=O)n(C)c(=O)c2c1[nH]cn2)C | ||
Standard InChI: InChI=1S/C10H14N4O2/c1-6(2)4-14-8-7(11-5-12-8)9(15)13(3)10(14)16/h5-6H,4H2,1-3H3,(H,11,12) | ||
Molecular Formula: C10H14N4O2 | Mol. Weight: 222.24376 | Heavy Atoms: 16 |
Charge: 0 | Is Chiral: False | logP: 0.0793 |
HBD: 1 | HBA: 5 | TPSA: 72.68 |
#Bonds: 18 | #Rotatable Bonds: 2 | Shape Complexity: 0.5 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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