PDB Entry (6f5h) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6f5h | Resolution: 2.16 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29541367 | DOI: 10.1021/acsmedchemlett.7b00512 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens |
Gene Symbol: USP7 | Gene ID: 7874 |
Pocket Descriptors | |
Volume: 229.76 | Depth: 12.1846 |
Hydrophobicity: 0.691057 | Drug Score: 0.176452 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]-6-(2-pyrrolidin-1-ylethylamino)pyrimidin-4-one | ||
HET ID: CQ5 | PubChem: 132990905 | |
DrugBank: - | ChEMBL: CHEMBL4294359 | |
Canonical SMILES: C[C@@H](c1ccccc1)CC(=O)N1CCC(CC1)(O)Cn1cnc(cc1=O)NCCN1CCCC1 | ||
Standard InChI: InChI=1S/C26H37N5O3/c1-21(22-7-3-2-4-8-22)17-24(32)30-14-9-26(34,10-15-30)19-31-20-28-23(18-25(31)33)27-11-16-29-12-5-6-13-29/h2-4,7-8,18,20-21,27,34H,5-6,9-17,19H2,1H3/t21-/m1/s1 | ||
Molecular Formula: C26H37N5O3 | Mol. Weight: 467.60367 | Heavy Atoms: 34 |
Charge: 0 | Is Chiral: True | logP: 2.2471 |
HBD: 2 | HBA: 8 | TPSA: 90.7 |
#Bonds: 38 | #Rotatable Bonds: 10 | Shape Complexity: 0.5769231 |
Stereocomplexity: 0.07692308 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 87 nM |