PDB Entry (6f5h)

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Visualizer: MichelaNGLo

PDB ID: 6f5h Resolution: 2.16 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29541367 DOI: 10.1021/acsmedchemlett.7b00512
Protein
Protein Name: Ubiquitin carboxyl-terminal hydrolase 7
Protein Class: HYDROLASE
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) Organism: Homo sapiens
Gene Symbol: USP7 Gene ID: 7874
Pocket Descriptors
Volume: 229.76 Depth: 12.1846
Hydrophobicity: 0.691057 Drug Score: 0.176452
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]-6-(2-pyrrolidin-1-ylethylamino)pyrimidin-4-one
HET ID:   CQ5 PubChem:   132990905
DrugBank:   - ChEMBL:   CHEMBL4294359
Canonical SMILES:   C[C@@H](c1ccccc1)CC(=O)N1CCC(CC1)(O)Cn1cnc(cc1=O)NCCN1CCCC1
Standard InChI:   InChI=1S/C26H37N5O3/c1-21(22-7-3-2-4-8-22)17-24(32)30-14-9-26(34,10-15-30)19-31-20-28-23(18-25(31)33)27-11-16-29-12-5-6-13-29/h2-4,7-8,18,20-21,27,34H,5-6,9-17,19H2,1H3/t21-/m1/s1
Molecular Formula:   C26H37N5O3 Mol. Weight:   467.60367 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   2.2471
HBD:   2 HBA:   8 TPSA:   90.7
#Bonds:   38 #Rotatable Bonds:   10 Shape Complexity:   0.5769231
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 87 nM