PDB Entry (3ivd) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3ivd | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Nucleotidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: A0A0H2VD83 (A0A0H2VD83_ECOL6) | Organism: Escherichia coli |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 531.776 | Depth: 35.0984 |
Hydrophobicity: 0.670082 | Drug Score: 0.0321323 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: URIDINE | ||
HET ID: URI | PubChem: 6029 | |
DrugBank: DB02745 | ChEMBL: CHEMBL100259 | |
Canonical SMILES: OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1ccc(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1 | ||
Molecular Formula: C9H12N2O6 | Mol. Weight: 244.20139 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: True | logP: -2.8519 |
HBD: 4 | HBA: 7 | TPSA: 124.78 |
#Bonds: 23 | #Rotatable Bonds: 2 | Shape Complexity: 0.5555556 |
Stereocomplexity: 0.44444445 | Ligand Type: Small Molecule |
Binding Affinity |
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