PDB Entry (4yfy)

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Visualizer: MichelaNGLo

PDB ID: 4yfy Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25752909 DOI: 10.1002/pro.2675
Protein
Protein Name: VioF N-formyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: M9P0Q2 (M9P0Q2_9GAMM) Organism: Providencia alcalifaciens
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 571.84 Depth: 33.4749
Hydrophobicity: 0.669355 Drug Score: 0.155889
Pocket Similarity: Calculate
Ligand
Ligand Name:   dTDP-4-amino-4,6-dideoxyglucose
HET ID:   0FX PubChem:   16757114
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1CO[P@@](=O)(O[P@@](=O)(O[C@H]1O[C@H](C)[C@H]([C@@H]([C@H]1O)O)N)O)O)n1cc(C)c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C16H27N3O14P2/c1-6-4-19(16(24)18-14(6)23)10-3-8(20)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(17)7(2)30-15/h4,7-13,15,20-22H,3,5,17H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t7-,8+,9-,10-,11-,12+,13-,15-/m1/s1
Molecular Formula:   C16H27N3O14P2 Mol. Weight:   547.3448 Heavy Atoms:   35
Charge:   0 Is Chiral:   True logP:   -1.7618
HBD:   7 HBA:   16 TPSA:   281.94
#Bonds:   46 #Rotatable Bonds:   8 Shape Complexity:   0.75
Stereocomplexity:   0.625 Ligand Type:   Small Molecule
Binding Affinity
-