PDB Entry (6qvo) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6qvo | Resolution: 2.45 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32144205 | DOI: 10.1074/jbc.RA120.012636 | |
Protein |
|
Protein Name: 7,8-dihydro-8-oxoguanine triphosphatase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P36639 (8ODP_HUMAN) | Organism: Homo sapiens |
Gene Symbol: NUDT1 | Gene ID: 4521 |
Pocket Descriptors | |
Volume: 331.968 | Depth: 16.7461 |
Hydrophobicity: 0.765217 | Drug Score: 0.324013 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE | ||
HET ID: 6MA | PubChem: 49866558 | |
DrugBank: - | ChEMBL: CHEMBL1230502 | |
Canonical SMILES: CNc1ncnc2c1ncn2[C@H]1C[C@@H]([C@H](O1)COP(=O)(O)O)O | ||
Standard InChI: InChI=1S/C11H16N5O6P/c1-12-10-9-11(14-4-13-10)16(5-15-9)8-2-6(17)7(22-8)3-21-23(18,19)20/h4-8,17H,2-3H2,1H3,(H,12,13,14)(H2,18,19,20)/t6-,7+,8+/m0/s1 | ||
Molecular Formula: C11H16N5O6P | Mol. Weight: 345.2484 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: True | logP: -0.3013 |
HBD: 4 | HBA: 11 | TPSA: 161.66 |
#Bonds: 28 | #Rotatable Bonds: 5 | Shape Complexity: 0.54545456 |
Stereocomplexity: 0.27272728 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |