PDB Entry (6qvo)

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Visualizer: MichelaNGLo

PDB ID: 6qvo Resolution: 2.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32144205 DOI: 10.1074/jbc.RA120.012636
Protein
Protein Name: 7,8-dihydro-8-oxoguanine triphosphatase
Protein Class: HYDROLASE
Uniprot ID/ACC: P36639 (8ODP_HUMAN) Organism: Homo sapiens
Gene Symbol: NUDT1 Gene ID: 4521
Pocket Descriptors
Volume: 331.968 Depth: 16.7461
Hydrophobicity: 0.765217 Drug Score: 0.324013
Pocket Similarity: Calculate
Ligand
Ligand Name:   N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE
HET ID:   6MA PubChem:   49866558
DrugBank:   - ChEMBL:   CHEMBL1230502
Canonical SMILES:   CNc1ncnc2c1ncn2[C@H]1C[C@@H]([C@H](O1)COP(=O)(O)O)O
Standard InChI:   InChI=1S/C11H16N5O6P/c1-12-10-9-11(14-4-13-10)16(5-15-9)8-2-6(17)7(22-8)3-21-23(18,19)20/h4-8,17H,2-3H2,1H3,(H,12,13,14)(H2,18,19,20)/t6-,7+,8+/m0/s1
Molecular Formula:   C11H16N5O6P Mol. Weight:   345.2484 Heavy Atoms:   23
Charge:   0 Is Chiral:   True logP:   -0.3013
HBD:   4 HBA:   11 TPSA:   161.66
#Bonds:   28 #Rotatable Bonds:   5 Shape Complexity:   0.54545456
Stereocomplexity:   0.27272728 Ligand Type:   Small Molecule
Binding Affinity
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