PDB Entry (6wdv)

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Visualizer: MichelaNGLo

PDB ID: 6wdv Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32659072 DOI: 10.1021/acschembio.0c00362
Protein
Protein Name: Polyamine deacetylase HDAC10
Protein Class: HYDROLASE
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) Organism: Danio rerio
Gene Symbol: hdac10 Gene ID: 327253
Pocket Descriptors
Volume: 212.992 Depth: 14.3482
Hydrophobicity: 0.715909 Drug Score: 0.332194
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-({3-[(dimethylamino)methyl]-1H-indol-1-yl}methyl)-N-hydroxybenzamide
HET ID:   TWM PubChem:   137634156
DrugBank:   - ChEMBL:   CHEMBL4066920
Canonical SMILES:   ONC(=O)c1ccc(cc1)Cn1cc(c2c1cccc2)CN(C)C
Standard InChI:   InChI=1S/C19H21N3O2/c1-21(2)12-16-13-22(18-6-4-3-5-17(16)18)11-14-7-9-15(10-8-14)19(23)20-24/h3-10,13,24H,11-12H2,1-2H3,(H,20,23)
Molecular Formula:   C19H21N3O2 Mol. Weight:   323.38895 Heavy Atoms:   24
Charge:   0 Is Chiral:   False logP:   3.2611
HBD:   2 HBA:   5 TPSA:   57.5
#Bonds:   26 #Rotatable Bonds:   6 Shape Complexity:   0.21052632
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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