PDB Entry (7jv8)

Download

Visualizer: MichelaNGLo

PDB ID: 7jv8 Resolution: 2.46 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32865411 DOI: 10.1021/acs.jmedchem.0c01086
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 333.952 Depth: 34.1413
Hydrophobicity: 0.62807 Drug Score: 0.0000131906
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-chloro-N-cyclopentyl-1-{5-O-[(2R)-1-hydroxy-3-methoxy-2-phosphonopropan-2-yl]-beta-D-ribofuranosyl}-1H-pyrazolo[3,4-d]pyrimidin-4-amine
HET ID:   VPD PubChem:   154585769
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COC[C@@](P(=O)(O)O)(OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1ncc2c1nc(Cl)nc2NC1CCCC1)CO
Standard InChI:   InChI=1S/C19H29ClN5O9P/c1-32-9-19(8-26,35(29,30)31)33-7-12-13(27)14(28)17(34-12)25-16-11(6-21-25)15(23-18(20)24-16)22-10-4-2-3-5-10/h6,10,12-14,17,26-28H,2-5,7-9H2,1H3,(H,22,23,24)(H2,29,30,31)/t12-,13-,14-,17-,19-/m1/s1
Molecular Formula:   C19H29ClN5O9P Mol. Weight:   537.8884 Heavy Atoms:   35
Charge:   0 Is Chiral:   True logP:   0.0557
HBD:   6 HBA:   14 TPSA:   211.35
#Bonds:   42 #Rotatable Bonds:   10 Shape Complexity:   0.7368421
Stereocomplexity:   0.2631579 Ligand Type:   Small Molecule
Binding Affinity
-