PDB Entry (6m72)

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Visualizer: MichelaNGLo

PDB ID: 6m72 Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33021500 DOI: 10.1107/S2059798320010992
Protein
Protein Name: 8-oxo-(d)GTP phosphatase
Protein Class: TRANSFERASE
Uniprot ID/ACC: A0QUZ2 (MUTT1_MYCS2) Organism: Mycolicibacterium smegmatis
Gene Symbol: - Gene ID: 45743943
Pocket Descriptors
Volume: 610.112 Depth: 22.9434
Hydrophobicity: 0.689922 Drug Score: 0.32785
Pocket Similarity: Calculate
Ligand
Ligand Name:   2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate)
HET ID:   8GD PubChem:   135566400
DrugBank:   - ChEMBL:   CHEMBL1230625
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1C)n1c(=O)[nH]c2c1nc(N)[nH]c2=O
Standard InChI:   InChI=1S/C10H13N5O4/c1-3-4(16)2-5(19-3)15-7-6(12-10(15)18)8(17)14-9(11)13-7/h3-5,16H,2H2,1H3,(H,12,18)(H3,11,13,14,17)/t3-,4+,5-/m1/s1
Molecular Formula:   C10H13N5O4 Mol. Weight:   267.24133 Heavy Atoms:   19
Charge:   0 Is Chiral:   True logP:   -0.7554
HBD:   4 HBA:   7 TPSA:   139.02
#Bonds:   26 #Rotatable Bonds:   1 Shape Complexity:   0.5
Stereocomplexity:   0.3 Ligand Type:   Small Molecule
Binding Affinity
-