PDB Entry (6m72) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6m72 | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33021500 | DOI: 10.1107/S2059798320010992 | |
Protein |
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Protein Name: 8-oxo-(d)GTP phosphatase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: A0QUZ2 (MUTT1_MYCS2) | Organism: Mycolicibacterium smegmatis |
Gene Symbol: - | Gene ID: 45743943 |
Pocket Descriptors | |
Volume: 610.112 | Depth: 22.9434 |
Hydrophobicity: 0.689922 | Drug Score: 0.32785 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate) | ||
HET ID: 8GD | PubChem: 135566400 | |
DrugBank: - | ChEMBL: CHEMBL1230625 | |
Canonical SMILES: O[C@H]1C[C@@H](O[C@@H]1C)n1c(=O)[nH]c2c1nc(N)[nH]c2=O | ||
Standard InChI: InChI=1S/C10H13N5O4/c1-3-4(16)2-5(19-3)15-7-6(12-10(15)18)8(17)14-9(11)13-7/h3-5,16H,2H2,1H3,(H,12,18)(H3,11,13,14,17)/t3-,4+,5-/m1/s1 | ||
Molecular Formula: C10H13N5O4 | Mol. Weight: 267.24133 | Heavy Atoms: 19 |
Charge: 0 | Is Chiral: True | logP: -0.7554 |
HBD: 4 | HBA: 7 | TPSA: 139.02 |
#Bonds: 26 | #Rotatable Bonds: 1 | Shape Complexity: 0.5 |
Stereocomplexity: 0.3 | Ligand Type: Small Molecule |
Binding Affinity |
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