PDB Entry (6s7f)

Download

Visualizer: MichelaNGLo

PDB ID: 6s7f Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: 10.1002/adtp.201900075
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 1574.4 Depth: 28.632
Hydrophobicity: 0.668182 Drug Score: 0.987057
Pocket Similarity: Calculate
Ligand
Ligand Name:   N6-benzyl-(alpha,beta)-methylene-ADP
HET ID:   KYK PubChem:   122207761
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@H](O)[C@H](O[C@H]1n1cnc2c1ncnc2NCc1ccccc1)CO[P@@](=O)(CP(=O)(O)O)O
Standard InChI:   InChI=1S/C18H23N5O9P2/c24-14-12(7-31-34(29,30)10-33(26,27)28)32-18(15(14)25)23-9-22-13-16(20-8-21-17(13)23)19-6-11-4-2-1-3-5-11/h1-5,8-9,12,14-15,18,24-25H,6-7,10H2,(H,29,30)(H,19,20,21)(H2,26,27,28)/t12-,14-,15-,18-/m1/s1
Molecular Formula:   C18H23N5O9P2 Mol. Weight:   515.3508 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   0.4678
HBD:   6 HBA:   14 TPSA:   229.0
#Bonds:   41 #Rotatable Bonds:   9 Shape Complexity:   0.3888889
Stereocomplexity:   0.2777778 Ligand Type:   Small Molecule
Binding Affinity
-