PDB Entry (7jv9)

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Visualizer: MichelaNGLo

PDB ID: 7jv9 Resolution: 2.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32865411 DOI: 10.1021/acs.jmedchem.0c01086
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 634.432 Depth: 26.8556
Hydrophobicity: 0.650847 Drug Score: 0.158544
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-chloro-N-[(2-chlorophenyl)methyl]-1-[5-O-(phosphonomethyl)-beta-D-ribofuranosyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine
HET ID:   VPG PubChem:   153012209
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@H](O)[C@H](O[C@H]1n1ncc2c1nc(Cl)nc2NCc1ccccc1Cl)COCP(=O)(O)O
Standard InChI:   InChI=1S/C18H20Cl2N5O7P/c19-11-4-2-1-3-9(11)5-21-15-10-6-22-25(16(10)24-18(20)23-15)17-14(27)13(26)12(32-17)7-31-8-33(28,29)30/h1-4,6,12-14,17,26-27H,5,7-8H2,(H,21,23,24)(H2,28,29,30)/t12-,13-,14-,17-/m1/s1
Molecular Formula:   C18H20Cl2N5O7P Mol. Weight:   520.26044 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   1.5892
HBD:   5 HBA:   12 TPSA:   181.89
#Bonds:   40 #Rotatable Bonds:   8 Shape Complexity:   0.3888889
Stereocomplexity:   0.22222222 Ligand Type:   Small Molecule
Binding Affinity
-