PDB Entry (6k35)

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Visualizer: MichelaNGLo

PDB ID: 6k35 Resolution: 2.36 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32145141 DOI: 10.1111/febs.15283
Protein
Protein Name: Beta-N-acetylhexosaminidase
Protein Class: HYDROLASE
Uniprot ID/ACC: D9ISE0 (D9ISE0_VIBHA) Organism: Vibrio harveyi
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 274.304 Depth: 24.3826
Hydrophobicity: 0.654618 Drug Score: 0.00849041
Pocket Similarity: Calculate
Ligand
Ligand Name:   3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL
HET ID:   NGT PubChem:   5289024
DrugBank:   DB03747 ChEMBL:   CHEMBL257158
Canonical SMILES:   OC[C@H]1O[C@@H]2SC(=N[C@@H]2[C@H]([C@@H]1O)O)C
Standard InChI:   InChI=1S/C8H13NO4S/c1-3-9-5-7(12)6(11)4(2-10)13-8(5)14-3/h4-8,10-12H,2H2,1H3/t4-,5-,6-,7-,8-/m1/s1
Molecular Formula:   C8H13NO4S Mol. Weight:   219.25812 Heavy Atoms:   14
Charge:   0 Is Chiral:   True logP:   -1.6052
HBD:   3 HBA:   6 TPSA:   107.58
#Bonds:   20 #Rotatable Bonds:   1 Shape Complexity:   0.875
Stereocomplexity:   0.625 Ligand Type:   Small Molecule
Binding Affinity
-