PDB Entry (6k35) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6k35 | Resolution: 2.36 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32145141 | DOI: 10.1111/febs.15283 | |
Protein |
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Protein Name: Beta-N-acetylhexosaminidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: D9ISE0 (D9ISE0_VIBHA) | Organism: Vibrio harveyi |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 274.304 | Depth: 24.3826 |
Hydrophobicity: 0.654618 | Drug Score: 0.00849041 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL | ||
HET ID: NGT | PubChem: 5289024 | |
DrugBank: DB03747 | ChEMBL: CHEMBL257158 | |
Canonical SMILES: OC[C@H]1O[C@@H]2SC(=N[C@@H]2[C@H]([C@@H]1O)O)C | ||
Standard InChI: InChI=1S/C8H13NO4S/c1-3-9-5-7(12)6(11)4(2-10)13-8(5)14-3/h4-8,10-12H,2H2,1H3/t4-,5-,6-,7-,8-/m1/s1 | ||
Molecular Formula: C8H13NO4S | Mol. Weight: 219.25812 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: -1.6052 |
HBD: 3 | HBA: 6 | TPSA: 107.58 |
#Bonds: 20 | #Rotatable Bonds: 1 | Shape Complexity: 0.875 |
Stereocomplexity: 0.625 | Ligand Type: Small Molecule |
Binding Affinity |
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