PDB Entry (6r0u)

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Visualizer: MichelaNGLo

PDB ID: 6r0u Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31251063 DOI: 10.1021/acs.jmedchem.9b00454
Protein
Protein Name: Cereblon isoform 4
Protein Class: CELL CYCLE
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) Organism: Magnetospirillum gryphiswaldense
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 206.656 Depth: 10.6583
Hydrophobicity: 0.815385 Drug Score: 0.654377
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-azanyl-2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]benzoic acid
HET ID:   JO8 PubChem:   138756816
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1C[C@@H](C(=O)N1)NC(=O)c1c(N)cccc1C(=O)O
Standard InChI:   InChI=1S/C12H11N3O5/c13-6-3-1-2-5(12(19)20)9(6)11(18)14-7-4-8(16)15-10(7)17/h1-3,7H,4,13H2,(H,14,18)(H,19,20)(H,15,16,17)/t7-/m0/s1
Molecular Formula:   C12H11N3O5 Mol. Weight:   277.23285 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   0.4128
HBD:   4 HBA:   8 TPSA:   138.59
#Bonds:   22 #Rotatable Bonds:   4 Shape Complexity:   0.16666667
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
-