PDB Entry (6r0u) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6r0u | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31251063 | DOI: 10.1021/acs.jmedchem.9b00454 | |
Protein |
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Protein Name: Cereblon isoform 4 | |
Protein Class: CELL CYCLE | |
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) | Organism: Magnetospirillum gryphiswaldense |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 206.656 | Depth: 10.6583 |
Hydrophobicity: 0.815385 | Drug Score: 0.654377 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-azanyl-2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]benzoic acid | ||
HET ID: JO8 | PubChem: 138756816 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1C[C@@H](C(=O)N1)NC(=O)c1c(N)cccc1C(=O)O | ||
Standard InChI: InChI=1S/C12H11N3O5/c13-6-3-1-2-5(12(19)20)9(6)11(18)14-7-4-8(16)15-10(7)17/h1-3,7H,4,13H2,(H,14,18)(H,19,20)(H,15,16,17)/t7-/m0/s1 | ||
Molecular Formula: C12H11N3O5 | Mol. Weight: 277.23285 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: 0.4128 |
HBD: 4 | HBA: 8 | TPSA: 138.59 |
#Bonds: 22 | #Rotatable Bonds: 4 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.083333336 | Ligand Type: Small Molecule |
Binding Affinity |
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