PDB Entry (6w4y)

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Visualizer: MichelaNGLo

PDB ID: 6w4y Resolution: 1.91 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32631553 DOI: 10.1016/j.bmcl.2020.127356
Protein
Protein Name: Human lambda-6A light chain JTO
Protein Class: ANTIBODY
Uniprot ID/ACC: - Organism: Homo sapiens
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 873.664 Depth: 22.6686
Hydrophobicity: 0.742857 Drug Score: 0.737753
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[(4~{R})-4-(2-methylpropyl)-2,5-bis(oxidanylidene)imidazolidin-1-yl]-~{N}-[4-(trifluoromethyl)phenyl]ethanamide
HET ID:   7ZW PubChem:   8092415
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC(C[C@H]1NC(=O)N(C1=O)CC(=O)Nc1ccc(cc1)C(F)(F)F)C
Standard InChI:   InChI=1S/C16H18F3N3O3/c1-9(2)7-12-14(24)22(15(25)21-12)8-13(23)20-11-5-3-10(4-6-11)16(17,18)19/h3-6,9,12H,7-8H2,1-2H3,(H,20,23)(H,21,25)/t12-/m1/s1
Molecular Formula:   C16H18F3N3O3 Mol. Weight:   357.32764 Heavy Atoms:   25
Charge:   0 Is Chiral:   True logP:   2.9501
HBD:   2 HBA:   6 TPSA:   78.51
#Bonds:   27 #Rotatable Bonds:   7 Shape Complexity:   0.4375
Stereocomplexity:   0.0625 Ligand Type:   Small Molecule
Binding Affinity
-