PDB Entry (6puf)

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Visualizer: MichelaNGLo

PDB ID: 6puf Resolution: 1.92 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32123373 DOI: 10.1038/s41590-020-0616-6
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Protein Class: CELL CYCLE
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens
Gene Symbol: MR1 Gene ID: 3140
Pocket Descriptors
Volume: 227.136 Depth: 32.5971
Hydrophobicity: 0.707101 Drug Score: 0.00351661
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol
HET ID:   2LJ PubChem:   137348063
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC/C=N/c1c(NC[C@@H]([C@@H]([C@@H](CO)O)O)O)[nH]c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C12H20N4O6/c1-2-3-13-8-10(15-12(22)16-11(8)21)14-4-6(18)9(20)7(19)5-17/h3,6-7,9,17-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t6-,7+,9-/m0/s1
Molecular Formula:   C12H20N4O6 Mol. Weight:   316.3104 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   -2.2646
HBD:   7 HBA:   8 TPSA:   171.03
#Bonds:   27 #Rotatable Bonds:   8 Shape Complexity:   0.5833333
Stereocomplexity:   0.25 Ligand Type:   Small Molecule
Binding Affinity
-