PDB Entry (6puf) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6puf | Resolution: 1.92 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32123373 | DOI: 10.1038/s41590-020-0616-6 | |
Protein |
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Protein Name: Major histocompatibility complex class I-related gene protein | |
Protein Class: CELL CYCLE | |
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: MR1 | Gene ID: 3140 |
Pocket Descriptors | |
Volume: 227.136 | Depth: 32.5971 |
Hydrophobicity: 0.707101 | Drug Score: 0.00351661 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol | ||
HET ID: 2LJ | PubChem: 137348063 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CC/C=N/c1c(NC[C@@H]([C@@H]([C@@H](CO)O)O)O)[nH]c(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C12H20N4O6/c1-2-3-13-8-10(15-12(22)16-11(8)21)14-4-6(18)9(20)7(19)5-17/h3,6-7,9,17-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t6-,7+,9-/m0/s1 | ||
Molecular Formula: C12H20N4O6 | Mol. Weight: 316.3104 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: True | logP: -2.2646 |
HBD: 7 | HBA: 8 | TPSA: 171.03 |
#Bonds: 27 | #Rotatable Bonds: 8 | Shape Complexity: 0.5833333 |
Stereocomplexity: 0.25 | Ligand Type: Small Molecule |
Binding Affinity |
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