PDB Entry (6r13)

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Visualizer: MichelaNGLo

PDB ID: 6r13 Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31251063 DOI: 10.1021/acs.jmedchem.9b00454
Protein
Protein Name: Cereblon isoform 4
Protein Class: CELL CYCLE
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) Organism: Magnetospirillum gryphiswaldense
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 227.264 Depth: 12.0532
Hydrophobicity: 0.813333 Drug Score: 0.618921
Pocket Similarity: Calculate
Ligand
Ligand Name:   ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-phenyl-propanamide
HET ID:   JOK PubChem:   138857409
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(N[C@H]1CC(=O)NC1=O)CCc1ccccc1
Standard InChI:   InChI=1S/C13H14N2O3/c16-11(7-6-9-4-2-1-3-5-9)14-10-8-12(17)15-13(10)18/h1-5,10H,6-8H2,(H,14,16)(H,15,17,18)/t10-/m0/s1
Molecular Formula:   C13H14N2O3 Mol. Weight:   246.26186 Heavy Atoms:   18
Charge:   0 Is Chiral:   True logP:   0.8702
HBD:   2 HBA:   5 TPSA:   75.27
#Bonds:   20 #Rotatable Bonds:   5 Shape Complexity:   0.30769232
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
-