PDB Entry (6r13) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6r13 | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31251063 | DOI: 10.1021/acs.jmedchem.9b00454 | |
Protein |
|
Protein Name: Cereblon isoform 4 | |
Protein Class: CELL CYCLE | |
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) | Organism: Magnetospirillum gryphiswaldense |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 227.264 | Depth: 12.0532 |
Hydrophobicity: 0.813333 | Drug Score: 0.618921 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-phenyl-propanamide | ||
HET ID: JOK | PubChem: 138857409 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C(N[C@H]1CC(=O)NC1=O)CCc1ccccc1 | ||
Standard InChI: InChI=1S/C13H14N2O3/c16-11(7-6-9-4-2-1-3-5-9)14-10-8-12(17)15-13(10)18/h1-5,10H,6-8H2,(H,14,16)(H,15,17,18)/t10-/m0/s1 | ||
Molecular Formula: C13H14N2O3 | Mol. Weight: 246.26186 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: 0.8702 |
HBD: 2 | HBA: 5 | TPSA: 75.27 |
#Bonds: 20 | #Rotatable Bonds: 5 | Shape Complexity: 0.30769232 |
Stereocomplexity: 0.07692308 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |