PDB Entry (6r4q) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6r4q | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Nickel-binding periplasmic protein | |
Protein Class: METAL BINDING PROTEIN | |
Uniprot ID/ACC: P33590 (NIKA_ECOLI) | Organism: Escherichia coli |
Gene Symbol: - | Gene ID: 947981 |
Pocket Descriptors | |
Volume: 79.872 | Depth: 8.66467 |
Hydrophobicity: 0.818182 | Drug Score: 0.0232151 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID | ||
HET ID: EDT | PubChem: 5232305, 6049 | |
DrugBank: DB00974 | ChEMBL: CHEMBL858 | |
Canonical SMILES: OC(=O)CN(CC(=O)O)CCN(CC(=O)O)CC(=O)O | ||
Standard InChI: InChI=1S/C10H16N2O8/c13-7(14)3-11(4-8(15)16)1-2-12(5-9(17)18)6-10(19)20/h1-6H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20) | ||
Molecular Formula: C10H16N2O8 | Mol. Weight: 292.24265 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: False | logP: -2.0712 |
HBD: 4 | HBA: 10 | TPSA: 155.68 |
#Bonds: 19 | #Rotatable Bonds: 11 | Shape Complexity: 0.6 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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