PDB Entry (6y3j) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6y3j | Resolution: 2.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32937373 | DOI: 10.1126/sciadv.abc0629 | |
Protein |
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Protein Name: Probable E3 ubiquitin-protein ligase DTX2 | |
Protein Class: LIGASE | |
Uniprot ID/ACC: Q86UW9 (DTX2_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DTX2 | Gene ID: 113878 |
Pocket Descriptors | |
Volume: 634.752 | Depth: 22.7051 |
Hydrophobicity: 0.658228 | Drug Score: 0.342942 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ADENOSINE-5-DIPHOSPHORIBOSE | ||
HET ID: APR | PubChem: 445794 | |
DrugBank: - | ChEMBL: CHEMBL1231026 | |
Canonical SMILES: O[C@@H]1[C@@H](CO[P@@](=O)(O[P@@](=O)(OC[C@H]2O[C@H]([C@@H]([C@@H]2O)O)O)O)O)O[C@H]([C@@H]1O)n1cnc2c1ncnc2N | ||
Standard InChI: InChI=1S/C15H23N5O14P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)8(21)5(32-14)1-30-35(26,27)34-36(28,29)31-2-6-9(22)11(24)15(25)33-6/h3-6,8-11,14-15,21-25H,1-2H2,(H,26,27)(H,28,29)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1 | ||
Molecular Formula: C15H23N5O14P2 | Mol. Weight: 559.31573 | Heavy Atoms: 36 |
Charge: 0 | Is Chiral: True | logP: -2.7015 |
HBD: 8 | HBA: 19 | TPSA: 311.14 |
#Bonds: 47 | #Rotatable Bonds: 9 | Shape Complexity: 0.6666667 |
Stereocomplexity: 0.6666667 | Ligand Type: Small Molecule |
Binding Affinity |
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