PDB Entry (6rt8) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6rt8 | Resolution: 2.19 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32066966 | DOI: 10.1038/s41589-019-0460-x | |
Protein |
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Protein Name: Catharanthine synthase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: A0A2P1GIW2 (CS_CATRO) | Organism: Catharanthus roseus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 94.912 | Depth: 16.7196 |
Hydrophobicity: 0.810811 | Drug Score: 0.0942777 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 18-carboxymethoxy-cleaviminium | ||
HET ID: KJE | PubChem: 146018684 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: COC(=O)[C@@H]1C[C@H]2C[N+](=CC(=C2)CC)CCC2C1=Nc1c2cccc1 | ||
Standard InChI: InChI=1S/C21H25N2O2/c1-3-14-10-15-11-18(21(24)25-2)20-17(8-9-23(12-14)13-15)16-6-4-5-7-19(16)22-20/h4-7,10,12,15,17-18H,3,8-9,11,13H2,1-2H3/q+1/t15-,17?,18+/m0/s1 | ||
Molecular Formula: C21H25N2O2+ | Mol. Weight: 337.4354 | Heavy Atoms: 25 |
Charge: 1 | Is Chiral: True | logP: 2.8832 |
HBD: 0 | HBA: 3 | TPSA: 41.67 |
#Bonds: 30 | #Rotatable Bonds: 3 | Shape Complexity: 0.47619048 |
Stereocomplexity: 0.14285715 | Ligand Type: Small Molecule |
Binding Affinity |
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