PDB Entry (6rt8)

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Visualizer: MichelaNGLo

PDB ID: 6rt8 Resolution: 2.19 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32066966 DOI: 10.1038/s41589-019-0460-x
Protein
Protein Name: Catharanthine synthase
Protein Class: HYDROLASE
Uniprot ID/ACC: A0A2P1GIW2 (CS_CATRO) Organism: Catharanthus roseus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 94.912 Depth: 16.7196
Hydrophobicity: 0.810811 Drug Score: 0.0942777
Pocket Similarity: Calculate
Ligand
Ligand Name:   18-carboxymethoxy-cleaviminium
HET ID:   KJE PubChem:   146018684
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COC(=O)[C@@H]1C[C@H]2C[N+](=CC(=C2)CC)CCC2C1=Nc1c2cccc1
Standard InChI:   InChI=1S/C21H25N2O2/c1-3-14-10-15-11-18(21(24)25-2)20-17(8-9-23(12-14)13-15)16-6-4-5-7-19(16)22-20/h4-7,10,12,15,17-18H,3,8-9,11,13H2,1-2H3/q+1/t15-,17?,18+/m0/s1
Molecular Formula:   C21H25N2O2+ Mol. Weight:   337.4354 Heavy Atoms:   25
Charge:   1 Is Chiral:   True logP:   2.8832
HBD:   0 HBA:   3 TPSA:   41.67
#Bonds:   30 #Rotatable Bonds:   3 Shape Complexity:   0.47619048
Stereocomplexity:   0.14285715 Ligand Type:   Small Molecule
Binding Affinity
-