PDB Entry (6yrp)

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Visualizer: MichelaNGLo

PDB ID: 6yrp Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32937203 DOI: 10.1016/j.ejmech.2020.112720
Protein
Protein Name: Metallo-beta-lactamase VIM-2-like protein
Protein Class: HYDROLASE
Uniprot ID/ACC: B8QIQ9 (B8QIQ9_PSEAI) Organism: Pseudomonas aeruginosa
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 680.32 Depth: 22.0363
Hydrophobicity: 0.653061 Drug Score: 0.383295
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[[[3-(5-methoxy-2-oxidanyl-phenyl)-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl]amino]methyl]benzoic acid
HET ID:   PJB PubChem:   154700543
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COc1ccc(c(c1)c1n[nH]c(=S)n1NCc1ccccc1C(=O)O)O
Standard InChI:   InChI=1S/C17H16N4O4S/c1-25-11-6-7-14(22)13(8-11)15-19-20-17(26)21(15)18-9-10-4-2-3-5-12(10)16(23)24/h2-8,18,22H,9H2,1H3,(H,20,26)(H,23,24)
Molecular Formula:   C17H16N4O4S Mol. Weight:   372.39835 Heavy Atoms:   26
Charge:   0 Is Chiral:   False logP:   2.8368
HBD:   4 HBA:   8 TPSA:   144.49
#Bonds:   29 #Rotatable Bonds:   6 Shape Complexity:   0.11764706
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-