PDB Entry (6szr) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6szr | Resolution: 1.64 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 317.504 | Depth: 11.2071 |
Hydrophobicity: 0.719512 | Drug Score: 0.557303 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[methyl-(phenylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione | ||
HET ID: M3Z | PubChem: 146018694 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1CC(=NC(=O)N1)CN(Cc1ccccc1)C | ||
Standard InChI: InChI=1S/C13H15N3O2/c1-16(8-10-5-3-2-4-6-10)9-11-7-12(17)15-13(18)14-11/h2-6H,7-9H2,1H3,(H,15,17,18) | ||
Molecular Formula: C13H15N3O2 | Mol. Weight: 245.2771 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: False | logP: 0.9637 |
HBD: 1 | HBA: 5 | TPSA: 61.77 |
#Bonds: 19 | #Rotatable Bonds: 4 | Shape Complexity: 0.30769232 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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