PDB Entry (6szr)

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Visualizer: MichelaNGLo

PDB ID: 6szr Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 317.504 Depth: 11.2071
Hydrophobicity: 0.719512 Drug Score: 0.557303
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[methyl-(phenylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione
HET ID:   M3Z PubChem:   146018694
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1CC(=NC(=O)N1)CN(Cc1ccccc1)C
Standard InChI:   InChI=1S/C13H15N3O2/c1-16(8-10-5-3-2-4-6-10)9-11-7-12(17)15-13(18)14-11/h2-6H,7-9H2,1H3,(H,15,17,18)
Molecular Formula:   C13H15N3O2 Mol. Weight:   245.2771 Heavy Atoms:   18
Charge:   0 Is Chiral:   False logP:   0.9637
HBD:   1 HBA:   5 TPSA:   61.77
#Bonds:   19 #Rotatable Bonds:   4 Shape Complexity:   0.30769232
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-