PDB Entry (6z9b)

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Visualizer: MichelaNGLo

PDB ID: 6z9b Resolution: 2.17 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32614585 DOI: 10.1021/acs.jmedchem.0c00525
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 1325.7 Depth: 29.8012
Hydrophobicity: 0.650685 Drug Score: 0.546434
Pocket Similarity: Calculate
Ligand
Ligand Name:   [[(2~{R},3~{R},4~{S},5~{R})-5-[2-chloranyl-6-[(phenylmethyl)amino]purin-9-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid
HET ID:   QCQ PubChem:   130206040
DrugBank:   - ChEMBL:   -
Canonical SMILES:   F[C@H]1[C@H](O)[C@H](O[C@H]1n1cnc2c1nc(Cl)nc2NCc1ccccc1)CO[P@@](=O)(CP(=O)(O)O)O
Standard InChI:   InChI=1S/C18H21ClFN5O8P2/c19-18-23-15(21-6-10-4-2-1-3-5-10)13-16(24-18)25(8-22-13)17-12(20)14(26)11(33-17)7-32-35(30,31)9-34(27,28)29/h1-5,8,11-12,14,17,26H,6-7,9H2,(H,30,31)(H,21,23,24)(H2,27,28,29)/t11-,12+,14-,17-/m1/s1
Molecular Formula:   C18H21ClFN5O8P2 Mol. Weight:   551.787 Heavy Atoms:   35
Charge:   0 Is Chiral:   True logP:   2.0984
HBD:   5 HBA:   13 TPSA:   208.77
#Bonds:   42 #Rotatable Bonds:   9 Shape Complexity:   0.3888889
Stereocomplexity:   0.2777778 Ligand Type:   Small Molecule
Binding Affinity
-