PDB Entry (6r0s)

Download

Visualizer: MichelaNGLo

PDB ID: 6r0s Resolution: 1.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31251063 DOI: 10.1021/acs.jmedchem.9b00454
Protein
Protein Name: Cereblon isoform 4
Protein Class: CELL CYCLE
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) Organism: Magnetospirillum gryphiswaldense
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 206.08 Depth: 11.7644
Hydrophobicity: 0.797101 Drug Score: 0.462941
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-6-nitro-benzoic acid
HET ID:   JOE PubChem:   138756815
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1NC(=O)[C@H](C1)NC(=O)c1cccc(c1C(=O)O)[N+](=O)[O-]
Standard InChI:   InChI=1S/C12H9N3O7/c16-8-4-6(11(18)14-8)13-10(17)5-2-1-3-7(15(21)22)9(5)12(19)20/h1-3,6H,4H2,(H,13,17)(H,19,20)(H,14,16,18)/t6-/m0/s1
Molecular Formula:   C12H9N3O7 Mol. Weight:   307.21576 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   0.6808
HBD:   3 HBA:   7 TPSA:   158.39
#Bonds:   24 #Rotatable Bonds:   5 Shape Complexity:   0.16666667
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
-