PDB Entry (6r0v)

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Visualizer: MichelaNGLo

PDB ID: 6r0v Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31251063 DOI: 10.1021/acs.jmedchem.9b00454
Protein
Protein Name: Cereblon isoform 4
Protein Class: CELL CYCLE
Uniprot ID/ACC: A4TVL0 (A4TVL0_9PROT) Organism: Magnetospirillum gryphiswaldense
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 208.256 Depth: 11.9264
Hydrophobicity: 0.797101 Drug Score: 0.451395
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid
HET ID:   JO2 PubChem:   138756817
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1NC(=O)[C@H](C1)NC(=O)c1cc(ccc1C(=O)O)[N+](=O)[O-]
Standard InChI:   InChI=1S/C12H9N3O7/c16-9-4-8(11(18)14-9)13-10(17)7-3-5(15(21)22)1-2-6(7)12(19)20/h1-3,8H,4H2,(H,13,17)(H,19,20)(H,14,16,18)/t8-/m0/s1
Molecular Formula:   C12H9N3O7 Mol. Weight:   307.21576 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   0.6808
HBD:   3 HBA:   7 TPSA:   158.39
#Bonds:   24 #Rotatable Bonds:   5 Shape Complexity:   0.16666667
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
-