PDB Entry (6szy) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6szy | Resolution: 1.79 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 465.728 | Depth: 17.2974 |
Hydrophobicity: 0.747967 | Drug Score: 0.576368 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-propan-2-yl-5,6,7,8-tetrahydro-4~{a}~{H}-quinazolin-2-one | ||
HET ID: M5N | PubChem: 146018698 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1N=C2CCCCC2C(=N1)C(C)C | ||
Standard InChI: InChI=1S/C11H16N2O/c1-7(2)10-8-5-3-4-6-9(8)12-11(14)13-10/h7-8H,3-6H2,1-2H3 | ||
Molecular Formula: C11H16N2O | Mol. Weight: 192.25754 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: 1.7194 |
HBD: 0 | HBA: 3 | TPSA: 41.79 |
#Bonds: 15 | #Rotatable Bonds: 1 | Shape Complexity: 0.72727275 |
Stereocomplexity: 0.09090909 | Ligand Type: Small Molecule |
Binding Affinity |
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