PDB Entry (6szy)

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Visualizer: MichelaNGLo

PDB ID: 6szy Resolution: 1.79 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 465.728 Depth: 17.2974
Hydrophobicity: 0.747967 Drug Score: 0.576368
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-propan-2-yl-5,6,7,8-tetrahydro-4~{a}~{H}-quinazolin-2-one
HET ID:   M5N PubChem:   146018698
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1N=C2CCCCC2C(=N1)C(C)C
Standard InChI:   InChI=1S/C11H16N2O/c1-7(2)10-8-5-3-4-6-9(8)12-11(14)13-10/h7-8H,3-6H2,1-2H3
Molecular Formula:   C11H16N2O Mol. Weight:   192.25754 Heavy Atoms:   14
Charge:   0 Is Chiral:   True logP:   1.7194
HBD:   0 HBA:   3 TPSA:   41.79
#Bonds:   15 #Rotatable Bonds:   1 Shape Complexity:   0.72727275
Stereocomplexity:   0.09090909 Ligand Type:   Small Molecule
Binding Affinity
-