PDB Entry (6szx)

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Visualizer: MichelaNGLo

PDB ID: 6szx Resolution: 1.17 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 606.784 Depth: 21.5184
Hydrophobicity: 0.72 Drug Score: 0.420036
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[cyclopropyl-(phenylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione
HET ID:   M4K PubChem:   146018695
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1CC(=NC(=O)N1)CN(C1CC1)Cc1ccccc1
Standard InChI:   InChI=1S/C15H17N3O2/c19-14-8-12(16-15(20)17-14)10-18(13-6-7-13)9-11-4-2-1-3-5-11/h1-5,13H,6-10H2,(H,17,19,20)
Molecular Formula:   C15H17N3O2 Mol. Weight:   271.3144 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   1.4963
HBD:   1 HBA:   5 TPSA:   61.77
#Bonds:   22 #Rotatable Bonds:   5 Shape Complexity:   0.4
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-