PDB Entry (6szx) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6szx | Resolution: 1.17 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 606.784 | Depth: 21.5184 |
Hydrophobicity: 0.72 | Drug Score: 0.420036 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[cyclopropyl-(phenylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione | ||
HET ID: M4K | PubChem: 146018695 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1CC(=NC(=O)N1)CN(C1CC1)Cc1ccccc1 | ||
Standard InChI: InChI=1S/C15H17N3O2/c19-14-8-12(16-15(20)17-14)10-18(13-6-7-13)9-11-4-2-1-3-5-11/h1-5,13H,6-10H2,(H,17,19,20) | ||
Molecular Formula: C15H17N3O2 | Mol. Weight: 271.3144 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: False | logP: 1.4963 |
HBD: 1 | HBA: 5 | TPSA: 61.77 |
#Bonds: 22 | #Rotatable Bonds: 5 | Shape Complexity: 0.4 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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