PDB Entry (6xec) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6xec | Resolution: 2.77 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31484304 | DOI: 10.3390/ijms20174301 | |
Protein |
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Protein Name: Histone deacetylase 2 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q92769 (HDAC2_HUMAN) | Organism: Homo sapiens |
Gene Symbol: HDAC2 | Gene ID: 3066 |
Pocket Descriptors | |
Volume: 220.864 | Depth: 26.9143 |
Hydrophobicity: 0.722467 | Drug Score: 0.014496 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (1S)-N-{(1S)-1-[5-cyano-2-(4-fluorophenyl)-1H-imidazol-4-yl]-7,7-dihydroxynonyl}-6-methyl-6-azaspiro[2.5]octane-1-carboxamide | ||
HET ID: V1S | PubChem: 153835403 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CCC(CCCCC[C@@H](c1nc([nH]c1C#N)c1ccc(cc1)F)NC(=O)[C@H]1CC21CCN(CC2)C)(O)O | ||
Standard InChI: InChI=1S/C28H38FN5O3/c1-3-28(36,37)12-6-4-5-7-22(32-26(35)21-17-27(21)13-15-34(2)16-14-27)24-23(18-30)31-25(33-24)19-8-10-20(29)11-9-19/h8-11,21-22,36-37H,3-7,12-17H2,1-2H3,(H,31,33)(H,32,35)/t21-,22+/m1/s1 | ||
Molecular Formula: C28H38FN5O3 | Mol. Weight: 511.6314 | Heavy Atoms: 37 |
Charge: 0 | Is Chiral: True | logP: 4.34688 |
HBD: 4 | HBA: 7 | TPSA: 125.27 |
#Bonds: 43 | #Rotatable Bonds: 12 | Shape Complexity: 0.6296296 |
Stereocomplexity: 0.071428575 | Ligand Type: Small Molecule |
Binding Affinity |
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