PDB Entry (6xec)

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Visualizer: MichelaNGLo

PDB ID: 6xec Resolution: 2.77 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31484304 DOI: 10.3390/ijms20174301
Protein
Protein Name: Histone deacetylase 2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q92769 (HDAC2_HUMAN) Organism: Homo sapiens
Gene Symbol: HDAC2 Gene ID: 3066
Pocket Descriptors
Volume: 220.864 Depth: 26.9143
Hydrophobicity: 0.722467 Drug Score: 0.014496
Pocket Similarity: Calculate
Ligand
Ligand Name:   (1S)-N-{(1S)-1-[5-cyano-2-(4-fluorophenyl)-1H-imidazol-4-yl]-7,7-dihydroxynonyl}-6-methyl-6-azaspiro[2.5]octane-1-carboxamide
HET ID:   V1S PubChem:   153835403
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCC(CCCCC[C@@H](c1nc([nH]c1C#N)c1ccc(cc1)F)NC(=O)[C@H]1CC21CCN(CC2)C)(O)O
Standard InChI:   InChI=1S/C28H38FN5O3/c1-3-28(36,37)12-6-4-5-7-22(32-26(35)21-17-27(21)13-15-34(2)16-14-27)24-23(18-30)31-25(33-24)19-8-10-20(29)11-9-19/h8-11,21-22,36-37H,3-7,12-17H2,1-2H3,(H,31,33)(H,32,35)/t21-,22+/m1/s1
Molecular Formula:   C28H38FN5O3 Mol. Weight:   511.6314 Heavy Atoms:   37
Charge:   0 Is Chiral:   True logP:   4.34688
HBD:   4 HBA:   7 TPSA:   125.27
#Bonds:   43 #Rotatable Bonds:   12 Shape Complexity:   0.6296296
Stereocomplexity:   0.071428575 Ligand Type:   Small Molecule
Binding Affinity
-