PDB Entry (6vn5) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6vn5 | Resolution: 2.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32302140 | DOI: 10.1021/acs.jmedchem.0c00245 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens |
Gene Symbol: USP7 | Gene ID: 7874 |
Pocket Descriptors | |
Volume: 308.224 | Depth: 15.6562 |
Hydrophobicity: 0.671533 | Drug Score: 0.0930094 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [(2R)-7-(2-aminopyridin-4-yl)-5-chloro-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone | ||
HET ID: R41 | PubChem: 146026046 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Clc1cc2C[C@@H](Oc2c(c1)c1ccnc(c1)N)C(=O)N1CCNCC1 | ||
Standard InChI: InChI=1S/C18H19ClN4O2/c19-13-7-12-8-15(18(24)23-5-3-21-4-6-23)25-17(12)14(10-13)11-1-2-22-16(20)9-11/h1-2,7,9-10,15,21H,3-6,8H2,(H2,20,22)/t15-/m1/s1 | ||
Molecular Formula: C18H19ClN4O2 | Mol. Weight: 358.82205 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: True | logP: 2.5674 |
HBD: 2 | HBA: 6 | TPSA: 80.48 |
#Bonds: 29 | #Rotatable Bonds: 3 | Shape Complexity: 0.33333334 |
Stereocomplexity: 0.055555556 | Ligand Type: Small Molecule |
Binding Affinity |
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