PDB Entry (6vn6) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6vn6 | Resolution: 2.99 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32302140 | DOI: 10.1021/acs.jmedchem.0c00245 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens |
Gene Symbol: USP7 | Gene ID: 7874 |
Pocket Descriptors | |
Volume: 317.504 | Depth: 20.5343 |
Hydrophobicity: 0.679104 | Drug Score: 0.0219658 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone | ||
HET ID: R4J | PubChem: 146026047 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OC[C@](c1cc2c(s1)c(ccn2)c1cc(Cl)cc2c1O[C@H](C2)C(=O)N1CCNCC1)(CCl)O | ||
Standard InChI: InChI=1S/C23H23Cl2N3O4S/c24-11-23(31,12-29)19-10-17-21(33-19)15(1-2-27-17)16-9-14(25)7-13-8-18(32-20(13)16)22(30)28-5-3-26-4-6-28/h1-2,7,9-10,18,26,29,31H,3-6,8,11-12H2/t18-,23+/m1/s1 | ||
Molecular Formula: C23H23Cl2N3O4S | Mol. Weight: 508.41742 | Heavy Atoms: 33 |
Charge: 0 | Is Chiral: True | logP: 3.0374 |
HBD: 3 | HBA: 8 | TPSA: 123.16 |
#Bonds: 38 | #Rotatable Bonds: 6 | Shape Complexity: 0.39130434 |
Stereocomplexity: 0.08695652 | Ligand Type: Small Molecule |
Binding Affinity |
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