PDB Entry (6vn2) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6vn2 | Resolution: 2.93 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32302140 | DOI: 10.1021/acs.jmedchem.0c00245 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens |
Gene Symbol: USP7 | Gene ID: 7874 |
Pocket Descriptors | |
Volume: 297.344 | Depth: 17.3112 |
Hydrophobicity: 0.679688 | Drug Score: 0.067248 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-({7-[(2R)-5-chloro-2-(piperazine-1-carbonyl)-2,3-dihydro-1-benzofuran-7-yl]thieno[3,2-b]pyridin-2-yl}methyl)-1H-pyrrole-2,5-dione | ||
HET ID: R44 | PubChem: 146672986 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Clc1cc2C[C@@H](Oc2c(c1)c1ccnc2c1sc(c2)CN1C(=O)CCC1=O)C(=O)N1CCNCC1 | ||
Standard InChI: InChI=1S/C25H23ClN4O4S/c26-15-9-14-10-20(25(33)29-7-5-27-6-8-29)34-23(14)18(11-15)17-3-4-28-19-12-16(35-24(17)19)13-30-21(31)1-2-22(30)32/h3-4,9,11-12,20,27H,1-2,5-8,10,13H2/t20-/m1/s1 | ||
Molecular Formula: C25H23ClN4O4S | Mol. Weight: 510.99252 | Heavy Atoms: 35 |
Charge: 0 | Is Chiral: True | logP: 3.2056 |
HBD: 1 | HBA: 9 | TPSA: 120.08 |
#Bonds: 41 | #Rotatable Bonds: 5 | Shape Complexity: 0.36 |
Stereocomplexity: 0.04 | Ligand Type: Small Molecule |
Binding Affinity |
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